Biopolym. Cell. 2009; 25(6):445-450.
Structure and Function of Biopolymers
Cloning, expression and purification of tRNAPro from bacteria Enterococcus faecalis
- Institute of Molecular Biology and Genetics, NAS of Ukraine
150, Akademika Zabolotnoho Str., Kyiv, Ukraine, 03680
Abstract
Aim. To elaborate the method of expression and purification of bacteria Enterococcus faecalis tRNAPro transcript. Methods. tRNA, co-expressed in vitro with cis-hydrolytical ribozyme, was purified by high performance liquid chromatography using anion-exchange chromatographic column. Results. A satisfactory yield of high purity preparation was obtained. A transcript of tRNAPro exhibits acceptor activity in aminoacylation reaction. Conclusions. The method developed may be introduced in laboratory practice including the obtaining of other tRNAs.
Keywords: RNA, transcript, gene expression in vitro, high performance liquid chromatography
Full text: (PDF, in English) (PDF, in Russian)
References
[1]
Meinnel T., Mechulam Y., Fayat G. Fast purification of a functional elongator tRNAMet expressed from a synthetic gene in vivo Nucl. Acids Res 1988 16, N 16:8095–8096.
[2]
Sherlin L. D., Bullock T. L., Nissan T. A., Perona J. J., Lariviere F. J., Uhlenbeck O. C., Scaringe S. A. Chemical and enzymatic synthesis of tRNAs for high-throughput crystallization RNA 2001 7, N 11:1671–1678.
[3]
Milligan J. F., Groebe D. R., Witherell G. W., Uhlenbeck O. C. Oligoribonucleotide synthesis using T7 RNA-polymerase and synthetic DNA templates Nucl. Acids Res 1987 15, N 21:8783–8798.
[4]
Crepin T., Yaremchuk A., Tukalo M., Cusack S. Structures of two bacterial prolyl-tRNA synthetases with and without a cisediting domain Structure 2006 14, N 10:1511–1525.
[5]
An S., Musier-Forsyth K. Cys-tRNA(Pro) editing by Haemophilus influenzae YbaK via a novel synthetase. YbaK.tRNA ternary complex J. Biol. Chem 2005 280, N 41 P. 34465–34472.
[6]
Boyarshin E. S., Kriklivyi I. A., Oukali I. A. tRNA-dependent editing of errors by prolyl-tRNA synthetase from bacteria Enterococcus faecalis. Ukr. Biokhim. Zh. 2008; 79(6):40–44.
[7]
Boyarshin K. S., Kriklivyi I. A., Rayevsky A. V., Himin A. A., Yaremchuk A. D., Tukalo I. A. Putative active site of Enterococcus faecalis prolyl-tRNA synthetase Biopolym. Cell 2009 25, N 1:39–43.
[8]
Taira K., Nakagawa K., Nishikawa S., Furukawa K. Construction of a novel RNA-transcript-trimming plasmid which can be used both in vitro in place of run-off and (G)-free transcriptions and in vivo as multi-sequences transcription vectors Nucl. Acids Res 1991 19, N 19:5125–5130.
[9]
Price S. R., Ito N., Oubridge C., Avis J. M., Nagai K. Crystallization of RNA. rotein complexes I. Methods for the largescale preparation of RNA suitable for crystallographic studies J. Mol. Biol 1995 249, N 2:398–408.
[10]
Kim I., McKenna S. A., Puglisi E. V., Puglisi J. D. Rapid purification of RNAs using fast performance liquid chromatography (FPLC) RNA 2007 13, N 2:289–294.
[11]
Shields T. S., Mollova E., Marie L. S., Hansen M. R., Pardi A. High-performance liquid chromatography purification pf homogenous-length RNA produced by trans cleavage with a hammerhead ribozyme RNA 1999 5, N 9:1259– 1267.
[12]
Sood S., Malhotra M., Das B. K., Kapil A. Enterococcal infections & antimicrobial resistance Indian J. Med. Res 2008 128, N 2:111–121.
[13]
Arias C. A., Murray B. E. Emergence and management of drug-resistant enterococcal infections Expert Rev Anti Infect Ther. 2008 6, N 5:637–655.
[14]
Birnboim H. C., Doly J. A rapid alkaline extraction procedure for screening recombinant plasmid DNA Nucl. Acids Res 1979 7, N 6:1513–1523.
[15]
Liu H., Peterson R., Kessler J., Musier-Forsyth K. Molecular recognition of tRNAPro by Escherichia coli proline tRNA synthetase in vitro Nucl. Acids Res 1995 23, N 1 P. 165–169.