Interaction of cyanine dyes with nucleic acids. I. Studies on monomethyne cyanine dyes as possible fluorescent probes for the detection of nucleic acids

Authors

  • S. M. Yarmoluk Institute of Molecular Biology and Genetics, NAS of Ukraine 150, Akademika Zabolotnoho Str., Kyiv, Ukraine, 03680 Author
  • A. N. Zhyvoloup Institute of Cell Biology and Genetic Engineering, NAS of Ukraine 148, Akademika Zabolotnogo Str., Kyiv, Ukraine, 03680 Author
  • V. B. Koval'ska Institute of Molecular Biology and Genetics, NAS of Ukraine 150, Akademika Zabolotnoho Str., Kyiv, Ukraine, 03680 Author
  • I. V. Klimenko Institute of Molecular Biology and Genetics, NAS of Ukraine 150, Akademika Zabolotnoho Str., Kyiv, Ukraine, 03680 Author
  • A. P. Kukharenko Institute of Molecular Biology and Genetics, NAS of Ukraine 150, Akademika Zabolotnoho Str., Kyiv, Ukraine, 03680 Author
  • Y. P. Kovtun Institute of organic chemistry NAS of Ukraine 5, Murmanska Str., Kyiv, Ukraine, 02660 Author
  • Y. L. Slominsky Institute of organic chemistry NAS of Ukraine 5, Murmanska Str., Kyiv, Ukraine, 02660 Author

DOI:

https://doi.org/10.7124/bc.000415

Abstract

The series of monomethyne cyanine dyes as possible fluorescent probes for DNA and RNA analysis were synthesized and their optical properties were studied. Two dyes interacted with native DNA and RNA with strong fluorescence enhancement (up to 350 and 1550 times for Cyan 3 and Cyan 6, respectively). The complex of Cyan 4 with nucleic acids had ' extremely large Stokes shift (154 nm). Methylenoxybenzthiazole residue seems to be perspective structural fragment for the synthesis of new nucleic acid binding cyanine dyes.

References

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Ishchenko AA. Structure and spectroscopic properties of polymethyne cyanine dyes. Kyiv: Naukova dumka. 1994; 231 p.

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Published

1996-01-20

Issue

Section

Biopolymers and Cell