Biopolym. Cell. 1991; 7(1):10-14.
http://dx.doi.org/10.7124/bc.000048
QenBee: a package of programs for biopolymers sequence analysis
1Brodsky L. I., 1Drachev A. L., 2Tatuzov R. L., 2Chumakov K. M.
  1. Coop 2 "ComBee" associated with Soviet-French-Italian Joint Venture "Interquadro"
    Moscow, USSR
  2. A. N. Belozersky Interfaculty Laboratory of Molecular Biology and Bioorganic Chemistry,
    M. V. Lomonosov State University
    Moscow, USSR

Abstract

The package of programs GenBee intended to analyze nucleotide and amino acid sequences is described. This package combines high-level algorithms (including original: ones) suitable for advanced theoretical studies with flexibility and user-friendly service: typical of commercially available packages. The package is designed for IBM-compatible personal computers. Accordingly it will be useful both for researches and students with, practically no background in computer methods, and for theoreticians.
Full text: (PDF, in Russian)

References

[1] Koonin EV, Chumakov KM, Gorbalenya AE. A method for search of structure motifs in amlnoacid sequences program site of the GenBee package. Biopolym Cell. 1990; 6(6):42-48.
[2] Trifonov EN. Translation framing code and frame-monitoring mechanism as suggested by the analysis of mRNA and 16 S rRNA nucleotide sequences. J Mol Biol. 1987;194(4):643-52.
[3] Leontovich AM, Brodsky LI, Gorbalenya AE. Compile of a complete map of local similarity for two biopolymers (DotHelix PROGRAM of the GenBee package). Biopolym Cell. 1990; 6(6):14-21.
[4] Brodsky LI, Drachev AL, Leontovich AM. A novel method of multiple sequence alighment of biopolymers (program H-Align of the GenBee package). Biopolym Cell. 1991; 7(1):14-22.
[5] Lipman DJ, Pearson WR. Rapid and sensitive protein similarity searches. Science. 1985;227(4693):1435-41.
[6] Hartigan JA. Clastering algorithms. New York: John Wiley and Sons, 1975. 256 p.
[7] Chumakov KM, Iushmanov SV. A principle of maximum topological similarity in molecular systematics. Mol Gen Mikrobiol Virusol. 1988;(3):3-9.
[8] Kunin EV, Chumakov KM, Iushmanov SV, Gorbalenia AE. Evolution of RNA-dependent RNA-polymerases from positive RNA viruses: comparison of phylogenetic trees constructed by different methods. Mol Gen Mikrobiol Virusol. 1988;(3):16-9.
[9] Gibrat JF, Garnier J, Robson B. Further developments of protein secondary structure prediction using information theory. New parameters and consideration of residue pairs. J Mol Biol. 1987;198(3):425-43.
[10] Gultyaev AP, Monakov YuN. The method for RNA secondary structure construction on the basis of self-organization principles. Biopolym Cell. 1990;6(6):31-36.