Biopolym. Cell. 2018; 34(2):127-141.
Bioorganic Chemistry
DNA-binding studies of a series of novel water-soluble derivatives of 1,4-dihydropyridine
1Leonova E., 1Rostoka E., 2Baumane L., 1, 3Borisovs V., 1Smelovs E., 2Bisenieks I., 2Brūvere I., 2Bisenieks E., 2Duburs G., 1, 2Sjakste N.
  1. Faculty of Medicine,
    University of Latvia
    1a, Sharlotes Str., Riga, Latvia, LV-1001
  2. Latvian Institute of Organic Synthesis
    21, Aizkraukles Str., Riga, Latvia, LV-1006
  3. Daugavpils University
    Vienības Street 13, Daugavpils, Latvia, LV-5401

Abstract

Aim. to determine DNA interaction modes for a series of 1,4-dihydropyridines with different biological activities synthesized in the Latvian Institute of Or-ganic Synthesis. Methods. Affinity of the compounds to DNA was detected by UV/VIS spec-trometry and re-proofed by means of spectrofluorimetry, EBr extrusion assay, cyclic voltammetry and DNA melting. Radical scavenging was tested by electron paramagnetic resonance spectros-copy, peroxynitrite binding was monitored spectrophotometrically, protection of DNA against hydroxyl radical was determined by gel electrophoresis. Results. In a series of water-soluble monocyclic derivatives of 1,4-dihydropyridine with carboxylate groups in position-4 the different affinity to DNA was determined mainly by substituents in positions 3 and 5. 1,4-DHP with eth-oxycarbonyl groups in positions 3 and 5 (AV-153) manifested high affinity to DNA. Strong ef-fects were observed in the spectra of tricyclic fused derivatives (PP-150-Na and PP-544-NH4). Unlike AV-153, J-4-96 did not extrude EtBr from the complex with DNA, this indicates binding to minor groove. Ability of PP-544-NH4 to intercalate DNA molecule was proved electrochemi-cally and by DNA melting. No correlation between affinity of a 1,4‑DHP to DNA and capabili-ties of the compound to bind peroxynitrite, to scavenge hydroxyl radical or to protect DNA against the above radical were observed. Discussion. DNA-binding activities of 1,4-DHP are evi-dently determined by groups in positions 3 and 5. Tricyclic fused 1,4-DHP derivatives are also good DNA binders. Ability to interact with DNA does not correlate with other effects produced by the compounds.
Keywords: 1,4-dihydropyridines, DNA binding, peroxynitrite binding, hydroxyl radical scavenging, DNA protection.

References

[1] Ryabokon NI, Goncharova RI, Duburs G, Rzeszowska-Wolny J. A 1,4-dihydropyridine derivative reduces DNA damage and stimulates DNA repair in human cells in vitro. Mutat Res. 2005;587(1-2):52-8.
[2] Ryabokon NI, Goncharova RI, Duburs G, Hancock R, Rzeszowska-Wolny J. Changes in poly(ADP-ribose) level modulate the kinetics of DNA strand break rejoining. Mutat Res. 2008;637(1-2):173-81.
[3] Ryabokon NI, Cieślar-Pobuda A, Rzeszowska-Wolny J. Inhibition of poly(ADP-ribose) polymerase activity affects its subcellular localization and DNA strand break rejoining. Acta Biochim Pol. 2009;56(2):243-8.
[4] Ryabokon NI, Nikitchenko NV, Dalivelya OV, Goncharova RI, Duburs G, Konopacka M, Rzeszowska-Wolny J. Modulation of cellular defense processes in human lymphocytes in vitro by a 1,4-dihydropyridine derivative. Mutat Res. 2009;679(1-2):33-8.
[5] Keles MS, Bayir Y, Suleyman H, Halici Z. Investigation of effects of Lacidipine, Ramipril and Valsartan on DNA damage and oxidative stress occurred in acute and chronic periods following isoproterenol-induced myocardial infarct in rats. Mol Cell Biochem. 2009;328(1-2):109-17.
[6] López-Alarcón C, Speisky H, Squella JA, Olea-Azar C, Camargo C, Núñez-Vergara LJ. Reactivity of 1,4-dihydropyridines toward SIN-1-derived peroxynitrite. Pharm Res. 2004;21(10):1750-7.
[7] Lob H, Rosenkranz AC, Breitenbach T, Berkels R, Drummond G, Roesen R. Antioxidant and nitric oxide-sparing actions of dihydropyridines and ACE inhibitors differ in human endothelial cells. Pharmacology. 2006;76(1):8-18.
[8] Pal S, Singh V, Das P, Choudhury LH. PEG-mediated one-pot multicomponent reactions for the efficient synthesis of functionalized dihydropyridines and their functional group dependent DNA cleavage activity. Bioorg Chem. 2013;48:8-15.
[9] Hyvönen Z, Plotniece A, Reine I, Chekavichus B, Duburs G, Urtti A. Novel cationic amphiphilic 1,4-dihydropyridine derivatives for DNA delivery. Biochim Biophys Acta. 2000;1509(1-2):451-66.
[10] Lin SJ, Lu HK, Lee HW, Chen YC, Li CL, Wang LF. Nitric oxide inhibits androgen receptor-mediated collagen production in human gingival fibroblasts. J Periodontal Res. 2012;47(6):701-10.
[11] uraka E, Chen CY, Gavare M, Grube M, Makarenkova G, Nikolajeva V, Bisenieks I, Brūvere I, Bisenieks E, Duburs G, Sjakste N. DNA-binding studies of AV-153, an antimutagenic and DNA repair-stimulating derivative of 1,4-dihydropiridine. Chem Biol Interact. 2014;220:200-7.
[12] Leonova E, Sokolovska J, Boucher JL, Isajevs S, Rostoka E, Baumane L, Sjakste T, Sjakste N. New 1,4-Dihydropyridines Down-regulate Nitric Oxide in Animals with Streptozotocin-induced Diabetes Mellitus and Protect Deoxyribonucleic Acid against Peroxynitrite Action. Basic Clin Pharmacol Toxicol. 2016;119(1):19-31.
[13] Robinson KM, Beckman JS. Synthesis of peroxynitrite from nitrite and hydrogen peroxide. Methods Enzymol. 2005;396:207-14.
[14] Zhang S, Sun X, Jing Z, Qu F. Spectroscopic analysis on the resveratrol-DNA binding interactions at physiological pH. Spectrochim Acta A Mol Biomol Spectrosc. 2011;82(1):213-6.
[15] Chen W, Li Y, Li J, Han Q, Ye L, Li A. Myricetin affords protection against peroxynitrite-mediated DNA damage and hydroxyl radical formation. Food Chem Toxicol. 2011;49(9):2439-44.
[16] Ošiņa K, Leonova E, Isajevs S, Baumane L, Rostoka E, Sjakste T, Bisenieks E, Duburs G, Vīgante B, Sjakste N. Modifications of expression of genes and proteins involved in DNA repair and nitric oxide metabolism by carbatonides [disodium-2,6-dimethyl-1,4-dihydropyridine- 3,5-bis(carbonyloxyacetate) derivatives] in intact and diabetic rats. Arh Hig Rada Toksikol. 2017;68(3):212-227.
[17] Carballal S, Bartesaghi S, Radi R. Kinetic and mechanistic considerations to assess the biological fate of peroxynitrite. Biochim Biophys Acta. 2014;1840(2):768-80.
[18] Vijesh AM, Isloor AM, Peethambar SK, Shivananda KN, Arulmoli T, Isloor NA. Hantzsch reaction: synthesis and characterization of some new 1,4-dihydropyridine derivatives as potent antimicrobial and antioxidant agents. Eur J Med Chem. 2011;46(11):5591-7.
[19] Shamsuzzaman, Dar AM, Khan Y, Sohail A. Synthesis and biological studies of steroidal pyran based derivatives. J Photochem Photobiol B. 2013;129:36-47.
[20] Rescifina A, Zagni C, Varrica MG, Pistarà V, Corsaro A. Recent advances in small organic molecules as DNA intercalating agents: synthesis, activity, and modeling. Eur J Med Chem. 2014;74:95-115.
[21] Palchaudhuri R, Hergenrother PJ. DNA as a target for anticancer compounds: methods to determine the mode of binding and the mechanism of action. Curr Opin Biotechnol. 2007;18(6):497-503.
[22] Augustyniak A, Bartosz G, Cipak A, Duburs G, Horáková L, Luczaj W, Majekova M, Odysseos AD, Rackova L, Skrzydlewska E, Stefek M, Strosová M, Tirzitis G, Venskutonis PR, Viskupicova J, Vraka PS, Zarković N. Natural and synthetic antioxidants: an updated overview. Free Radic Res. 2010;44(10):1216-62.