Biopolym. Cell. 2010; 26(6):499-507.
Genomics, Transcriptomics and Proteomics
Genome variability of some Gentiana L. species in nature and in culture in vitro: RAPD-analysis
- Institute of Molecular Biology and Genetics, NAS of Ukraine
150, Akademika Zabolotnoho Str., Kyiv, Ukraine, 03680 - Volodymyr Hnatiuk Ternopil' National Pedagogical University
2, M. Kryvonosa Str., Ternopil', Ukraine, 46027
Abstract
Aim. Investigation of intraspecies and somaclonal variability of G. acaulis, G. cruciata and G. punctata. Methods. Random amplified polymorphic DNA-polymerase chain reaction (RAPD-PCR), gel-electrophoresis. Results. It was established a species specificity for indicators of gentians genetic heterogeneity – the proportion of polymorphic amplicons and genetic distances. A level of intraspecies variation decreased in the direction of G. acaulis > G. punctata > G. cruciata. Changes in gentians tissue culture by the proportion of polymorphic amplicons were shown to vary within the range of 10–15 % and failed to extend beyond the intraspecies variation. Conclusions. Genome variation of G. acaulis, G. cruciata and G. punctata was studied through the use of RAPD-PCR. The gentians were found to be characterized by different variability in both nature and culture in vitro. In the tissue culture there were discovered considerably smaller number changes as compared to intraspecies variation.
Keywords: genome variability, Gentiana L. species, plant tissue culture, intraspecies, somaclonal variation, RAPD-PCR
Full text: (PDF, in English) (PDF, in Ukrainian)
References
[1]
Red data Book of Ukraine. Plants and Fungy / 2 ed Kyiv: M. Bazhan Ukr. encyclopedy, 1996 608 p.
[2]
Strashniuk N. M., Hrytsak L. R., Les'kova O. M., Mel'nyk V. M. Introduction in culture in vitro of some Gentiana L. genus species. Physiol. Biochem. Cultivated Plants. 2004; 36(4):327–334.
[3]
Strashniuk N. M., Twardovska M. O., Mel'nyk V. M. Introduction in culture in vitro of Gentiana cruciata L. and Gentiana pneumonanthe L. species. Nauk. zap., Ser. Biol. (Ternop. nats. pedagog. univ. im. Volodymyra Gnatuka). 2006; 2(29):100–107.
[4]
Pat. of Ukraine on a useful model N 36436 dated by 27.10. 2008. Method to gain of nontransgenic root isolated culture of gentians (Gentiana L.). N. M. Strashniuk, L. R. Hrytsak, V. M. Mel’nyk, M. O. Twardovska, I. I. Konvalyuk, V. A. Kunakh Bull. N 20.
[5]
Mel'nyk V. M., Andreev I. O., Spiridonova K. V., Kunakh V. A. Restriction mapping and variability of 18S-25S ribosomal genes in some species of Gentiana genus. Tsitol. Genet. 2003; 37(5):65–71.
[6]
Andreev IO, Spiridonova KV, Mel'nyk VM, Kunakh VA. Interspecies polymorphism and rearrangements in culture in vitro of 5S rRNA genes in Gentiana L. species. Dopovidi Nats Akad Nauk Ukrainy. 2004; (6):189-92.
[7]
Strashniuk N. M., Twardovska M. O., Mel'nyk V. M. Karyology of some European species of Gentiana L. (Gentianaceae). Ukr. Bot. Zhur. 2008; 65(6):836–848.
[8]
Twardovska M. O., Strashniuk N. M., Mel'nyk V. M., Konvalyuk I. I., Kunakh V. A. RAPD-analysis of the genome polymorphism for some Gentiana L. species from the Ukrainian flora. Repts Nat. Acad. Sci. Ukr. 2009; N 5:200–204.
[9]
Mel'nyk V. M., Spiridonova K. V., Andreev I. O., Strashniuk N. M., Kunakh V. A. Variability of nuclear 18S-25S rDNA of Gentiana lutea L. in nature and in tissue culture in vitro. Tsitol. Genet. 2004; 38(3):16–21.
[10]
Mel'nyk V. M., Andreev I. O., Spiridonova K. V., Strashniuk N. M., Kunakh V. A. 18S-25S rDNA variation in tissue culture of some Gentiana L. species. Tsitol. Genet. 2007; 41(2):19–23.
[11]
Twardovska M. O., Strashniuk N. M., Mel'nyk V. M., Kunakh V. A. Evaluation of some Gentiana L. species tissue culture genetic variation. Bull. of Vavilov Soc. Geneticists and Breeders of Ukr. 2007; 5(1–2):104–111.
[12]
Twardovska M. O., Strashniuk N. M., Mel'nyk V. M., Adonin V. I., Kunakh V. A. Chromosomal variability in a tissue culture of rare species of the genus Gentiana L. Cytology and Genetics. 200;8 42(4):12–17.
[13]
Yeh F. C., Rongcai Y., Boyle T. POPGENE. Version 1.31 Edmonton: Univ. Alberta, 1999.
[14]
Nei M., Li W.-H. Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc. Nat. Acad. Sci. USA. 1979; 76(10):5269–5273.
[15]
Kumar S., Tamura K., Nei M. MEGA3: Integrated software for molecular evolution genetics analysis and sequences alignment. Briefin. Bioinf. 2004 5(2):150–163.
[16]
Nevo E. E. Evolution of genome-phenome diversity under environmental stress Proc. Nat. Acad. Sci. USA 2001 98, N 11:6233–6240.
[17]
Ward S. Genetic analysis of invasive plant populations at different spatial scales. Biol. Invas 2006 8, N 3:541–552.
[18]
Roman B., Hernandez R., Pujadas-Salva A. J., Cubero J. I., Rubiales D., Satovic Z. Genetic diversity in two variants of Orobanche gracilis Sm. [var. gracilis and var. deludens (Beck) A. Pujadas] (Orobanchaceae) from different regions of Spain Electron. J. Biotechnol 2007 10, N 2:221–229.
[19]
Fisher M., Matthies D. RAPD variation in relation to population size and plant fitness in the rare Gentianella germanica (Gentianaceae). Am. J. Bot 1998 85, N 6:811–819.
[20]
Bublyk O. M., Andreev I. O., Spiridonova K. V., Muzyka V. I., Kolonina I. V., Kunakh V. A. Genetic heterogeneity of the rare endemic species Ungernia victoris (Amaryllidaceae): RAPD-analysis. Ukr. Bot. Zhur. 2008; 65(3):445– 452.
[21]
Martirosyan E. V., Ryzhova N. N., Skryabin K. G., Kochieva E. Z. RAPD analysis of genome polymorphism in the family Lemnaceae. Russ. J. Genet 2008 44, N 3:360-4.
[22]
Serebryakova T. I. Models of shoot formation and some evolutionary trends in the genus Gentiana L. Bull. MOIP Sect. Biol. 1979; 84(6):97–109.
[23]
Hungerer K. B., Kadereit J. W. The phylogeny and biogeography of Gentiana L. sect. Ciminalis (Adans.) Dumort.: A historical interpretation of distribution ranges in the European high mountains Persp. Plant Ecol., Evol. and System 1998 1, N 1:121–135.
[24]
Bublyk O. M., Andreev I. O., Spiridonova K. V., Mozhylevska L. P., Kunakh V. A. Studies on the genome variability in Ungernia victoris tissue culture through RAPD-markers Bull. of Vavilov Soc. Geneticists and Breeders of Ukr. 2006 4(1):3–11.
[25]
Bublyk O. M., Andreev I. O., Spiridonova K. V., Kunakh V. A. Somaclonal variability of Ungernia victoris: the necessity of comprehensive genetic analysis. Biopolym. cell. 2008; 24, N 6:487–493.
[26]
Kozyrenko M. M., Artyukova E. V., Lauve L. S., Boltenkov E. V. The analysis of genetic variability of callus cultures of several species of Iris L. genus. Russ. J. Biotechnol 2002. N 4:38–48.
[27]
Solov'yan V. T., Spiridonova K. V., Kunakh V. A. Genome rearrangements in cell culture of Rauwolfia serpentina: Diverse pattern of genome variations. Russ. J. Genet. 1994 30(2):250–254.
[28]
Kozyrenko M. M., Artyukova E. V., Lauve L. S., Zhuravlev Yu. N., Reunova G. D. The genetic variability of Panax ginseng callus lines. Russ. J. Biotechnol. 2001; N 1:19–26.
[29]
Twardovska M. O., Strashniuk N. M., Mel'nyk V. M., Adonin V. I., Kunakh V. A. Chromosome number variability and chromosome aberration level in Gentiana acaulis L. tissue culture. Bull. of Vavilov Soc. Geneticists and Breeders of Ukr. 2006; 4(2):204–209.