Biopolym. Cell. 2005; 21(4):358-364.
Molecular Biophysics
The binding of actinocin antibiotics to polyphosphate matrix
- A. Usikov Institute of Radio Physics and Electronics, NAS of Ukraine
12, Proskura Str., Kharkov, Ukraine, 61085
Abstract
The complexes of actinocin derivatives ActII and ActIII (analogues of actinomycin D) with polyphosphate were studied by spectrophotometry and Raman spectroscopy methods. All studies were carried out in a phosphatic buffer solution (pH 6,86) with total concentration of Na+ and K+ equal to 7×10–3 M. The DALSPH program of optimization of spectrophotometric concentration dependences was used for calculations of complexes spectra and thermodynamic binding parameters. The values of binding constants and binding site sizes, the spectra of monomeric and aggregated complexes of actinocin derivatives for ActII and ActIII were obtained by the analysis of spectrophotometrical titration curves. The basic groups of atoms participating in formation of different types of complexes were determined by the Raman spectroscopy method. The amino group of actinocin derivative was shown to be bound to P=O group of polyphosphate matrix at monomeric binding mode.
Keywords: spectrophotometry, Raman spectroscopy, polyphosphate, actinocin derivatives
Full text: (PDF, in Russian)
References
[2]
Graves DE, M. Velea LM. Intercalative Binding of Small Molecules to Nucleic Acids. Curr Org Chem; 2000;4(9):915–29.
[3]
Timtcheva I, Maximova V, Deligeorgiev T, Zaneva D, Ivanov I. New asymmetric monomethine cyanine dyes for nucleic-acid labelling: absorption and fluorescence spectral characteristics. J Photochem Photobiol A: Chem. 2000;130(1):7–11.
[4]
Sovenyhazy KM, Bordelon JA, Petty JT. Spectroscopic studies of the multiple binding modes of a trimethine-bridged cyanine dye with DNA. Nucleic Acids Res. 2003;31(10):2561-9.
[5]
Karapetian AT, Vardevanian PO, Tarzikian GA, Frank-Kamenetskii MD. Theory of Helix-Coil Transition on DNA-Ligand Complexes: The Effect to Two Types of Interaction of Ligand on the Parameters of Transition. J Biomol Struct Dyn. 1990;8(1):123–30.
[6]
Zozulya VN, Fyodorov VF, Blagoy YuP. Cooperative binding of daunomycin and carminomycin to inorganic polyphosphate. Stud Biophys. 1990; 137: 17-28.
[7]
Kruglova EB, Yermar EL. Competitive binding of two ligands: aktinotsinovogo derivative and caffeine polyribocytidylic acid in different conformational states. Vestnik Kharkovs Univ. Biofiz Vestnik. 2004; 1-2 (14):32-7.
[8]
Kruglova EB, Gladkovskaya NA. Influence of AT, GC composition of the binding aktinotsinovyh derivatives with DNA. Vestnik Kharkovs Univ. Biofiz Vestnik. 2004; 1-2 (14):43-47.
[9]
Glibin EN, Ovchinnikov DV, Plekhanova NG. Synthesis of actinomycin analogues. Zh Org Khim. 1997;33(10):1573-6.
[10]
Anticancer drug desing. Eds A. N. Veselkov, D. B. Davies. London: Sevntu press, 2002. 259 p.
[11]
Hartley F, Burgess C, Alcock R. Solution equlibria. London: Ellis Horwood, 1980. 360 p.
[12]
Kruglova EB, Maleev VYa, Glibin EN, Veselkov AN. Spectrophotometric analysis dimerization actinocin derivatives with different side chain lengths. Vestnik Kharkovs Univ. Biofiz Vestnik. 2002; 1 (10): 12-20.
[13]
Nechipurenko IuD. [Cooperation effects in binding of large ligands to DNA. II. Contact interactions between adsorbed ligands]. Mol Biol (Mosk). 1984;18(4):1066-80. Russian.
[14]
Zasedatelev AS, Gurskii GV, Vol'kenshtein MV. Theory of one-dimensional adsorption. I. Adsorption of small molecules on a homopolymer. Mol Biol. 1971;5(2):194-8.
[15]
McGhee JD, von Hippel PH. Theoretical aspects of DNA-protein interactions: co-operative and non-co-operative binding of large ligands to a one-dimensional homogeneous lattice. J Mol Biol. 1974;86(2):469-89.
[16]
Kruglova EB, Gladkovskaya NA, Maleev VYa. Modeling of processes linking actinocine antibiotics to DNA at different ionic strengths and temperatures. Vestnik Kharkovs Univ. Biofiz Vestnik. 2003; 1 (12):53-63.
[17]
Grasselli JG, Snavely MK, Bulkin BJ. Chemical applications of raman spectroscopy. Wiley-Interscience, New York, 1981.
[18]
Kruglova EB, Maleev VYa, Glibin EN, Veselkov AN. Physical mechanisms of interaction actinocin derivatives with DNA. 6. Spectrophotometric study of DNA complexes with derivatives actinocin with different length of methylene chains. Vest Kharkiv Univer N 560, Biofiz vestn. 2002;iss 1 (10):20-29.
[19]
Nabiev IR, Efremov RG, Chumanov GD. [Enhanced Raman scattering and its application to the study of biological molecules]. Usp Fiz Nauk. 1988; 154(3):459-96.
[20]
Ueda T, Ushizawa K, Tsuboi M. Depolarization of Raman scattering from some nucleotides of RNA and DNA. Biopolymers. 1993;33(12):1791-802.
[21]
Kruglova EB. Spectrophotometric analysis of the processes of cooperative binding in the polyphosphate-coloured ligand system. Biophysics. 1994;39: 247-55.
[22]
Smulevich G, Angeloni L, Marzocchi MP. Raman excitation profiles of actinomycin D. Biochim Biophys Acta. 1980;610(2):384-91.
[23]
Bolbukh TV, Bliznyuk YuN, Kruglova EB, Dukhopelnikov EV, Semenov MA, Maleev VYa. Physical mechanisms of interaction actinocin derivatives with DNA. 9. The physical properties of the complex aktinotsil-bis- (3-dimethylaminopropyl) amine, single- polyribocytidylic acid according to Raman spectroscopy, and spectrophotometry. Vestnik Kharkovs Univ. Biofiz Vestnik. 2004; 1-2 (14):38-42.