Biopolym. Cell. 1994; 10(1):41-46.
Study of conformational characteristics of transcriptionally active and repressed chromatin by means of fluorescent probes
- Institute of Pharmacology and Toxicology of National Medical Academy of Science of Ukraine
14, Eugene Pottier Str., Kyiv, Ukraine, 03057
Abstract
Conformational characteristics of transcriptionally active and repressed chromatin fractions from rat liver were studied by means of pyrene probe and 1,8-ANS. It was shown that there observed inductive-resonance energy transfer (IRET) between chromatin protein chromophores and the pyrene molecules, which were introduced to the solution; this allowed to conclude about some structural parameters of protein-lipid interactions. Probability of energy transfer from protein fluorophores to pyrene and the portion of protein tryptophane residues, which took part in IRET, were calculated. Marked differences in the values of the parameters stated for the chromatin fractions observed allowed to conclude about less compact package of the active fraction, which was the necessary premise for the launching and realization transcriptional process, as well as about the dependence of this process on the character of the interaction of proteins and lipids in chromatin.
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References
[1]
Vladimirov YuA., Dobretsov GE. Fluorescent Probes in the study of biological membranes. Moscow: Nauka, 1980. 320 p.
[2]
Dobretsov GE. Fluorescent probes in the study of cell membranes and lipoproteins. Moscow: Nauka, 1989. 277 p.
[3]
J. Lakovich, Principles of Fluorescence Spectroscopy. Plenum, New York, 1986.
[4]
Chikhirzhina GI, Domkina LK, Chigareva NG, Ashmarin IP. Solubilization of chromatin by an endogenous enzymic Ca2+, Mg2+-dependent factor. Activity of residual chromatin. Mol Biol (Mosk). 1976;10(6):1303-10.
[5]
Tsanev RG, Markov GG. On the problem of quantitative spectrophotometric determination of nucleic acid. Biokhimiia. 1960;25:151-9.
[6]
GubskiÄ IuI, Levitskii EL, Gol'dshteÄn NB, Mozzhukhina TG, Litoshenko AIa, Novikova SN. Functional activity of fractionated chromatin from rat liver upon a single administration of carbon tetrachloride. Vopr Med Khim. 1989;35(4):119-24.
[7]
GubskiÄ IuI, Levitskii EL, Primak RG, Golubov MI, Novikova SN. Conformational characteristics and packing of endogenous lipid fractions of transcriptionally active and repressed chromatin. Ukr Biokhim Zh. 1991;63(2):83-9.
[8]
GubskiÄ IuI, LevitskiÄ EL, ChabannyÄ VN, Gol'dshteÄn NB, Kapralov AA, Petrova GV, Donchenko GV, Volkov GL, Litoshenko AIa. Changes in protein, lipid composition, DNA- and RNA- polymerase activity of the chromatin fraction and the nuclear matrix of the rat liver in hypovitaminosis E. Ukr Biokhim Zh. 1990;62(6):22-30.
[9]
Kraevskii VA, Krylov DIu, Razin SV, Mikhailov VS. Analysis of the conformational mobility of DNA in transcriptionally-active chromatin. Biofizika. 1993;38(1):108-16.
[10]
Dobretsov GE. Fluorescent probe study of the spatial structure of membranes and lipoproteins. Ukr Biokhim Zh. 1984;56(2):211-22.
[11]
Demchenko AP. Luminescence and protein structure dynamics . Kiev Naukova. Dumka, 1988. 280 p.
[12]
Vekshin NL. Use of pyrene as a luminescence indicator of the viscosity of model and biological membranes. Nauchnye Doki Vyss Shkoly Biol Nauki. 1987;(11):59-66.
[13]
Levitsky E. L., Gubsky Yu. I., Chabanny V. N., Volkov G. L., Novikova S. N. Biochemical characteristics of the rat liver transcriptionally active and repressed chromatin. Biopolym Cell. 1993; 9(6):13-21.