Cooperative intramolecular H-bonds in quercetine: MNDO/H quantum chemical investigation
DOI:
https://doi.org/10.7124/bc.0005B6Abstract
For the first time four anticooperative intramolecular H-bonds have been determined by the semiempirical quantum chemical method MNDO/H in eight low-energy (in the energy range ΔE ≤ 1 kcal/mol) conformations of quercetine, a molecule with the wide spectrum of biological activity. Two of these H-bonds are bifurcated ones (C5OH...OC4 and C3OH...OC4) in a heterocycle, one (C6'H...OC3) – between a hetero- and a phenyl cycles, and one (C3'OH...OC4' or C4OH..OC3', depending on conformation) – in a phenyl ring. The H-bonds energies are 8.8, 2.9, 2.8 and 1.4 kcal/mol , respectively. The H-bonds parameters are conformationally insensitive. The effect of their anticooperativity, mutual weakening, reaches –1.1 kcal/mol A possibility of experimental (by vibrational spectroscopy) confirmation of the existence of these intramolecular H-bonds is discussed as well as the reasons of a propeller-like orientation of planar hetero- and phenyl cycles, which is the intrinsic characteristic of all low-energy quercetine conformations.References
Gryshchenko OM, Degtyareva LS, Pypypchuk LB. Physico-chemical properties and electronic structure of quercetin. Farmatsevtychnyy Zhurnal. 1999;(2):34-8.
Bogdan TV, Trygubenko SA, Pylypchuk LB, Potyahaylo AL, Samijlenko SP, Hovorun DM. Conformational analysis of quercetine molecule. NaUKMA Academic Records. 2001; 19(I, special issue):456-60
Govorun DM, Mishchuk YaR, Kondratyuk IV, Zheltovsky MV. Intramolecular cooperative hydrogen bonds in nucleotide bases. Dopovidi Nats Akad Nauk Ukrainy. 1996;(8):141-4.
Govorun DM, Kondratyuk IV. Anisotropic rotation of amino groups in canonical nucleotide bases. Dopovidi Nats Akad Nauk Ukrainy. 1996;(10):151-4.
Mishchuk YaR, Hovorun DM. Intramolecular hydrogen bonds and structural nonrigidity of pyrimidine nucleosides. Biopolym Cell. 1998; 14(4):360-370.
Hovorun DM. On the microstructural origin of the linear DNA curvature. Dopovidi Nats Akad Nauk Ukrainy. 1998; (5):189-95.
Mishchuk YaR, Hovorun DM. Mutually dependent intramolecular hydrogen bonds in cytidine and deoxycytidine and their stereochemical nonrigidity. Dopovidi Nats Akad Nauk Ukrainy. 1999; (5):193-9.
Mishchuk Y., Potyagaylo A., Hovorun D. Structure and dynamics of 6-azacytidine by MNDO/H quantum-chemical method. J Mol Struc. 2000;552(1-3):283–9.
Samijlenko SP, Alexeeva IV, Palchykivs'ka LH, Kondratyuk IV, Stepanyugin AV, Shalamay AS, Hovorun DM. Structural features of 6-azacytidine and its derivatives: data of NMR and IR spectroscopies. Biopolym Cell. 1997; 13(6):445-52.
Samijlenko SP, Alexeeva IV, Palchykivs'ka LH, Kondratyuk IV, Stepanyugin AV, Shalamay AS, Hovorun DM. Structural peculiarities of 6-azacytosine and its derivatives imply intramolecular H-bonds. J Mol Struct. 1999; 484(1-3):31-8.
Samijlenko SP, Alexeeva IV, Palchykivs'ka LH, Kondratyuk IV, Stepanyugin AV, Shalamay AS, Hovorun DM. 1H NMR investigation on 6-azacytidine and its derivatives. Spectrochim Acta - Part A: Mol Biomol Spectrosc. 1999; 55(5):1133-41.
Shishkin OV, Pelmenschikov A, Hovorun DM, Leszczynski J. Molecular structure of free canonical 2?-deoxyribonucleosides: a density functional study. J Mol Struct. 2000;526(1-3):329–41.
Hovorun DM. Physico-chemical mechanisms of biomolecular recognition. Thesis for the Doctor of sciences. Kyiv, 1999; 34 p.