Biopolym. Cell. 2021; 37(2):143-152.
Bioorganic Chemistry
Dihydrofolate reductase inhibitors among pteridine and furo[3,2-g]pteridine derivatives
1Nosulenko I. S., 1Kazunin M. S., 1Kinichenko A. O., 1Antypenko O. M., 2Zhurakhivska L. R., 1Voskoboinik O. Yu., 1Kovalenko S. I.
  1. Zaporizhia State Medical University
    26, Mayakovsky avenue, Zaporizhzhia, Ukraine, 69035
  2. Lviv Polytechnic National University
    12, S. Bandery Str., Lviv, Ukraine, 79013

Abstract

Aim. To the purposeful search for the DHFR-inhibitors among substituted pteridine-2,4,7-triones and 7-aryl-(hetaryl-)furo[3,2-g]pteridine-2,4(1H,3H)-diones for further biological research. Methods. In vitro methods, molecular docking, SAR-analysis, statistical methods. Results. The DHFR-inhibitory activity of substituted 1-methylpteridine-2,4,7-triones (2, 3, 4) and 7-aryl-(hetaryl-)furo[3,2-g]pteridine-2,4(1H,3H)-diones (5, 6) was studied. It was established that 6-(2-hydroxy-2-aryl-(hetaryl-)ethyl)-1-methylpteridine-2,4,7(1H,3H,8H)-triones (3) and butyl 2-(7-aryl- (hetaryl-)-1-methyl-2,4-dioxo-1,4-dihydrofuro[3,2-g]pteridine-3(2H)-yl)acetates (6) inhibited DHFR by 14.59–52.11 %, and were less active comparing to methotrexate. It was found that the introduction of aryl moiety with electron-accepting group, naphthyl substituent or electron-accepting heterocycle (furan, thiophene and benzofuran) caused an increase in the DHFR-inhibitory activity. Additionally, it was shown, that annulation of the furan cycle to the pteridine system was reasonable in the scope of new DHFR-inhibitors synthesis. Thereby it may be concluded that the calculated values of affinity are not reliable predictors for the DHFR-inhibiting activity of studied compound. However, the molecular docking study may be used for evaluation of the interactions between the studied inhibitor and active center of DHFR. Conclusions. The conducted primary in vitro screening revealed low or moderate DHFR-inhibiting activity of the synthesized compounds. The visualization of molecular docking showed that despite the structural similarity to methotrexate, the obtained compounds form different ligand-enzyme interactions. The calculated values of affinity cannot be used as predictors of DHFR-inhibiting activity because of the absence of correlation between the abovementioned indicators.
Keywords: DHFR-inhibiting activity, pteridine, furo[3,2-g]pteridine, molecular docking, QSAR-analysis

References

[1] Avendaño C, Menéndez JC. Chapter 2 – Antimetabolites. In: Medicinal Chemistry of Anticancer Drugs. 2008; 9–52.
[2] Benkovic SJ, Hammes-Schiffer S. A perspective on enzyme catalysis. Science. 2003;301(5637):1196-202.
[3] Bailey LB, Caudill MA. Folate. In Eardman JW Jr, MacDonald IA, Zeisel SH (Eds.). Present Knowledge in Nutrition, Tenth Edition. Ames, IA: ILSI Press/Wiley-Blackwell. 2012: 321–42.
[4] Christensen KE, Mackenzie RE. Mitochondrial methylenetetrahydrofolate dehydrogenase, methenyltetrahydrofolate cyclohydrolase, and formyltetrahydrofolate synthetases. Vitam Horm. 2008;79:393-410.
[5] Ducker GS, Rabinowitz JD. One-Carbon Metabolism in Health and Disease. Cell Metab. 2017;25(1):27-42.
[6] Naderi N, House JD. Recent Developments in Folate Nutrition. Adv Food Nutr Res. 2018;83:195-213.
[7] Lan X, Field MS, Stover PJ. Cell cycle regulation of folate-mediated one-carbon metabolism. Wiley Interdiscip Rev Syst Biol Med. 2018;10(6):e1426.
[8] Jackman AL. Antifolate drugs in cancer therapy. Totowa, NJ: Humana Press; 1999, 456 p.
[9] Johari-Ahar M, Barar J, Alizadeh AM, Davaran S, Omidi Y, Rashidi MR. Methotrexate-conjugated quantum dots: synthesis, characterisation and cytotoxicity in drug resistant cancer cells. J Drug Target. 2016;24(2):120-33.
[10] Kompis IM, Islam K, Then RL. DNA and RNA synthesis: antifolates. Chem Rev. 2005;105(2):593-620.
[11] Purcell WT, Ettinger DS. Novel antifolate drugs. Curr Oncol Rep. 2003;5(2):114-25.
[12] Gonen N, Assaraf YG. Antifolates in cancer therapy: structure, activity and mechanisms of drug resistance. Drug Resist Updat. 2012;15(4):183-210.
[13] Raimondi MV, Randazzo O, La Franca M, Barone G, Vignoni E, Rossi D, Collina S. DHFR Inhibitors: Reading the Past for Discovering Novel Anticancer Agents. Molecules. 2019;24(6):1140.
[14] Duff MR Jr, Gabel SA, Pedersen LC, DeRose EF, Krahn JM, Howell EE, London RE. The Structural Basis for Nonsteroidal Anti-Inflammatory Drug Inhibition of Human Dihydrofolate Reductase. J Med Chem. 2020;63(15):8314-8324.
[15] Takemura Y, Kobayashi H, Miyachi H. Cellular and molecular mechanisms of resistance to antifolate drugs: new analogues and approaches to overcome the resistance. Int J Hematol. 1997;66(4):459-77.
[16] Zhao R, Goldman ID. Resistance to antifolates. Oncogene. 2003;22(47):7431-57.
[17] Yang J, Wang M, Li X, Fan N, Xue L, Li H, Tian C, Wang X, Liu J, Zhang Z. Syntheses and antiproliferative evaluation of 6-thienyl, 6-polyphenyl aryl and 6-naphthyl derivatives of 2,4-diaminopyrido[3,2-d]pyramidine as non-classical antifolate targeting DHFR. Chem Res Chin Univ. 2017; 33: 559–68.
[18] Wang M, Yang J, Yuan M, Xue L, Li H, Tian C, Wang X, Liu J, Zhang Z. Synthesis and antiproliferative activity of a series of novel 6-substituted pyrido[3,2-d]pyrimidines as potential nonclassical lipophilic antifolates targeting dihydrofolate reductase. Eur J Med Chem. 2017;128:88-97.
[19] Tian C, Wang M, Han Z, Fang F, Zhang Z, Wang X, Liu J. Design, synthesis and biological evaluation of novel 6-substituted pyrrolo [3,2-d] pyrimidine analogues as antifolate antitumor agents. Eur J Med Chem. 2017;138:630-643.
[20] Kazunin MS, Voskoboynik OYu, Nosulenko IS, Berest GG, Sergeieva TA, Okovytyy SI, Karpenko OV, Priimenko BO, Kovalenko SI. Synthesis, Tautomerism, and Antiradical Activity of Novel Pteridinetrione Derivatives. J Heterocyclic Chem. 2018; 55(4): 1033–41.
[21] Kazunin MS, Voskoboynik OYu, Nosulenko IS, Berest GG, Kholodniak SV, Pryymenko BO, Kovalenko SI. Synthesis, antiradical, and antimicrobial activities of new pteridine‐2,4,7‐trione derivatives. J Heterocyclic Chem. 2019: 57(1):268-280.
[22] Kazunin MS, Voskoboynik OY, Shishkina SV, Antypenko OM, Kovalenko SI. A Simple and Convenient Method for the Synthesis of 1-Methyl-7-arylfuro[3,2-g]pteridine-2,4(1H,3H)-diones and Their Substituted Derivatives. Acta Chim Slov. 2020;67(2):586-593.
[23] Trott O, Olson AJ. AutoDock Vina: improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading. J Comput Chem. 2010;31(2):455-61.